My Publications

Journals

• ViraFit: Tunable Fitness Model for Viral Evolution Within a Contact Network - Journal of Computational Biology, 2026
• Variant evolution graph: Can we infer how SARS-CoV-2 variants are evolving? - PLOS ONE, 2025
• HT-ARGfinder: A Comprehensive Pipeline for Identifying Horizontally Transferred Antibiotic Resistance Genes and Directionality in Metagenomic Sequencing Data - Frontiers in Environmental Science, 2022
• Quartet-based inference of cell differentiation trees from ChIP-Seq histone modification data - PLOS ONE, 2019

Conferences

• DeePSP-GIN: identification and classification of phage structural proteins using predicted protein structure, pretrained protein language model, and graph isomorphism network - BCB '24: Proceedings of the 15th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics
• An Area-efficient 2–to–4 Decoder Design Based on Quantum Dot Cellular Automata - 2021 International Conference on Science & Contemporary Technologies (ICSCT), 2021
• An Effective Design of 2 : 1 Multiplexer and 1 : 2 Demultiplexer using 3-dot QCA Architecture - 2019 International Conference on Robotics, Electrical and Signal Processing Techniques (ICREST), 2019
• An Efficient Design of 4 - to - 2 Encoder and Priority Encoder Based on 3-dot QCA Architecture - 2019 International Conference on Electrical, Computer and Communication Engineering (ECCE), 2019

Manuscript

Mutation Learning Graph: A Mutation-Space Graph Construction Framework for Viral Genomes (accepted at IEEE BIBM 2026)